1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g07200

LOC_Os06g07200


Description : syntaxin, putative, expressed


Gene families : OG_42_0000336 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000336_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g07200
Cluster HCCA clusters: cluster_0072

Target Alias Description ECC score Gene Family Method Actions
74098 No alias syntaxin of plants 124 0.02 Orthogroups_2024-Update
93442 No alias syntaxin of plants 124 0.02 Orthogroups_2024-Update
A4A49_40935 No alias syntaxin-124 0.03 Orthogroups_2024-Update
At3g03800 No alias Syntaxin of plants 131 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQP3] 0.03 Orthogroups_2024-Update
Bradi3g07970 No alias syntaxin of plants 124 0.03 Orthogroups_2024-Update
Brara.B00269.1 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.02 Orthogroups_2024-Update
Brara.D00592.1 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.02 Orthogroups_2024-Update
Brara.G00197.1 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.02 Orthogroups_2024-Update
GRMZM2G029270 No alias syntaxin of plants 124 0.04 Orthogroups_2024-Update
GRMZM2G414540 No alias syntaxin of plants 121 0.03 Orthogroups_2024-Update
LOC_Os06g39050 No alias syntaxin, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g19600.1 No alias SYP1-group Qa-type SNARE component 0.03 Orthogroups_2024-Update
Mp6g00050.1 No alias SYP1-group Qa-type SNARE component 0.02 Orthogroups_2024-Update
Pp1s300_43V6 No alias qa-sso1 syntaxin1-syp12a-group 0.02 Orthogroups_2024-Update
Solyc01g006950 No alias Syntaxin, putative (AHRD V3.3 *** B9SDJ9_RICCO) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006448 regulation of translational elongation IEP Predicted GO
BP GO:0006449 regulation of translational termination IEP Predicted GO
BP GO:0006452 translational frameshifting IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
BP GO:0009891 positive regulation of biosynthetic process IEP Predicted GO
BP GO:0009893 positive regulation of metabolic process IEP Predicted GO
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010628 positive regulation of gene expression IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0031325 positive regulation of cellular metabolic process IEP Predicted GO
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043243 positive regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045727 positive regulation of translation IEP Predicted GO
BP GO:0045901 positive regulation of translational elongation IEP Predicted GO
BP GO:0045905 positive regulation of translational termination IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051130 positive regulation of cellular component organization IEP Predicted GO
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051247 positive regulation of protein metabolic process IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 245 297
IPR006011 Syntaxin_N 40 244
No external refs found!