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  5. LOC_Os06g07580

LOC_Os06g07580


Description : expressed protein


Gene families : OG_42_0002853 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g07580
Cluster HCCA clusters: cluster_0084

Target Alias Description ECC score Gene Family Method Actions
At2g19750 No alias 40S ribosomal protein S30... 0.03 Orthogroups_2024-Update
Brara.A00791.1 No alias component *(eS30) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.C01230.1 No alias component *(eS30) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Brara.I04721.1 No alias component *(eS30) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre16.g666301 No alias Ribosomal protein S30 family protein 0.08 Orthogroups_2024-Update
GRMZM2G054012 No alias Ribosomal protein S30 family protein 0.04 Orthogroups_2024-Update
HORVU7Hr1G027760.1 No alias component *(eS30) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Mp2g24290.1 No alias component RPS30 of SSU proteome 0.02 Orthogroups_2024-Update
PSME_00048165-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Potri.012G086600 No alias Ribosomal protein S30 family protein 0.04 Orthogroups_2024-Update
Potri.014G147200 No alias Ribosomal protein S30 family protein 0.05 Orthogroups_2024-Update
Potri.015G084700 No alias Ribosomal protein S30 family protein 0.04 Orthogroups_2024-Update
Pp1s22_155V6 No alias 40s ribosomal protein s30 0.03 Orthogroups_2024-Update
Pp1s283_53V6 No alias 40s ribosomal protein s30 0.05 Orthogroups_2024-Update
Pp1s97_259V6 No alias 40s ribosomal protein s30 0.02 Orthogroups_2024-Update
Solyc08g076340 No alias 40S ribosomal protein S30 (AHRD V3.3 *** W9QWZ6_9ROSA) 0.03 Orthogroups_2024-Update
Solyc12g008700 No alias peroxisomal ABC transporter 1 (AHRD V3.3 --* AT4G39850.4) 0.04 Orthogroups_2024-Update
evm.model.tig00001003.33 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006846 Ribosomal_S30 3 59
No external refs found!