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  5. LOC_Os06g07780

LOC_Os06g07780


Description : vesicle-associated membrane protein, putative, expressed


Gene families : OG_42_0000264 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g07780
Cluster HCCA clusters: cluster_0113

Target Alias Description ECC score Gene Family Method Actions
80138 No alias vesicle-associated membrane protein 714 0.02 Orthogroups_2024-Update
At4g32150 No alias Vesicle-associated membrane protein 711... 0.03 Orthogroups_2024-Update
Bradi1g05030 No alias vesicle-associated membrane protein 726 0.02 Orthogroups_2024-Update
Brara.C01000.1 No alias R-type VAMP7-group component of SNARE longin membrane... 0.02 Orthogroups_2024-Update
Brara.I03700.1 No alias R-type VAMP7-group component of SNARE longin membrane... 0.02 Orthogroups_2024-Update
Glyma.09G045400 No alias vesicle-associated membrane protein 724 0.02 Orthogroups_2024-Update
Glyma.11G181900 No alias vesicle-associated membrane protein 714 0.02 Orthogroups_2024-Update
Glyma.15G126200 No alias vesicle-associated membrane protein 726 0.02 Orthogroups_2024-Update
Mp7g07410.1 No alias VAMP7-type R-type SNARE longin protein 0.02 Orthogroups_2024-Update
Potri.008G209100 No alias vesicle-associated membrane protein 724 0.02 Orthogroups_2024-Update
Potri.009G018900 No alias vesicle-associated membrane protein 714 0.03 Orthogroups_2024-Update
Potri.010G239900 No alias vesicle-associated membrane protein 727 0.03 Orthogroups_2024-Update
Sobic.002G068300.1 No alias R-type component *(VAMP721/VAMP722) of SNARE cell-plate... 0.03 Orthogroups_2024-Update
Sobic.010G058500.2 No alias R-type VAMP7-group component of SNARE longin membrane... 0.04 Orthogroups_2024-Update
Solyc09g061620 No alias Vesicle-associated membrane protein, putative (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen06g034910 No alias Synaptobrevin 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0030289 protein phosphatase 4 complex IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001388 Synaptobrevin 125 212
IPR010908 Longin_dom 29 109
No external refs found!