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  5. LOC_Os06g09060

LOC_Os06g09060


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g09060
Cluster HCCA clusters: cluster_0133

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g19600 No alias retrotransposon, putative, centromere-specific, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g28260 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g16480 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.02 Orthogroups_2024-Update
Mp2g03770.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Sopen12g011940 No alias Integrase core domain 0.02 Orthogroups_2024-Update
evm.model.tig00001182.5 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0018580 nitronate monooxygenase activity IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000477 RT_dom 534 693
IPR005162 Retrotrans_gag_dom 118 207
No external refs found!