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LOC_Os06g11970


Description : OsMADS63 - MADS-box family gene with MIKC* type-box, expressed


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g11970
Cluster HCCA clusters: cluster_0093

Target Alias Description ECC score Gene Family Method Actions
At4g37940 No alias Agamous-like MADS-box protein AGL21... 0.02 Orthogroups_2024-Update
Glyma.20G136600 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Potri.012G125600 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.016G118900 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Solyc02g089200 No alias TM29 0.03 Orthogroups_2024-Update
Solyc05g015730 No alias No description available 0.02 Orthogroups_2024-Update
Solyc06g035570 No alias No description available 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!