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LOC_Os06g22760


Description : OsMADS71 - MADS-box family gene with M-alpha type-box, expressed


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g22760
Cluster HCCA clusters: cluster_0024

Target Alias Description ECC score Gene Family Method Actions
A4A49_26055 No alias mads-box protein agl42 0.02 Orthogroups_2024-Update
At3g57230 No alias Agamous-like MADS-box protein AGL16... 0.02 Orthogroups_2024-Update
Brara.A03890.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.J01588.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.02 Orthogroups_2024-Update
GRMZM2G018589 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
LOC_Os09g32948 No alias OsMADS8 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
MA_333471g0010 No alias (at2g45660 : 106.0) Controls flowering and is required... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005747 mitochondrial respiratory chain complex I IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
CC GO:0030964 NADH dehydrogenase complex IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
CC GO:0045271 respiratory chain complex I IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!