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  5. LOC_Os06g23950

LOC_Os06g23950


Description : OsMADS59 - MADS-box family gene with MIKCc type-box


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g23950
Cluster HCCA clusters: cluster_0102

Target Alias Description ECC score Gene Family Method Actions
A4A49_11564 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
A4A49_26055 No alias mads-box protein agl42 0.03 Orthogroups_2024-Update
A4A49_63894 No alias agamous-like mads-box protein agl15 0.03 Orthogroups_2024-Update
At3g57230 No alias Agamous-like MADS-box protein AGL16... 0.04 Orthogroups_2024-Update
At3g61120 No alias Agamous-like MADS-box protein AGL13... 0.02 Orthogroups_2024-Update
GRMZM2G152862 No alias K-box region and MADS-box transcription factor family protein 0.05 Orthogroups_2024-Update
HORVU7Hr1G081190.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os02g45770 No alias OsMADS6 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g02780 No alias OsMADS77 - MADS-box family gene with M-alpha type-box, expressed 0.02 Orthogroups_2024-Update
Potri.001G284301 No alias AGAMOUS-like 21 0.02 Orthogroups_2024-Update
Potri.004G115400 No alias AGAMOUS-like 8 0.03 Orthogroups_2024-Update
Potri.006G048700 No alias AGAMOUS-like 18 0.02 Orthogroups_2024-Update
Seita.4G177800.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G258000.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Solyc01g092950 No alias MADS-box transcription factor (AHRD V3.3 *** A0A072TQ92_MEDTR) 0.02 Orthogroups_2024-Update
Solyc05g015730 No alias No description available 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0003006 developmental process involved in reproduction IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
BP GO:0009790 embryo development IEP Predicted GO
BP GO:0009793 embryo development ending in seed dormancy IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!