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  5. LOC_Os06g28480

LOC_Os06g28480


Description : polygalacturonase inhibitor 1 precursor, putative, expressed


Gene families : OG_42_0001859 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g28480
Cluster HCCA clusters: cluster_0089

Target Alias Description ECC score Gene Family Method Actions
233681 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
A4A49_12252 No alias lrr receptor-like serinethreonine-protein kinase erecta 0.03 Orthogroups_2024-Update
At4g03010 No alias Leucine-rich repeat family protein... 0.02 Orthogroups_2024-Update
Glyma.10G023100 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Glyma.13G005800 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
Glyma.19G151800 No alias RNI-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G001000 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Potri.014G136100 No alias Leucine-rich repeat (LRR) family protein 0.04 Orthogroups_2024-Update
Seita.4G154100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen07g022570 No alias Leucine Rich Repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008198 ferrous iron binding IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Predicted GO
BP GO:0052646 alditol phosphate metabolic process IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 126 171
IPR013210 LRR_N_plant-typ 32 71
No external refs found!