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  5. Solyc08g023640

Solyc08g023640


Description : Pentatricopeptide repeat-containing protein family (AHRD V3.3 *** A0A151RRH8_CAJCA)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g023640
Cluster HCCA clusters: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
93702 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_07003 No alias pentatricopeptide repeat-containing protein 0.04 Orthogroups_2024-Update
At2g34400 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Orthogroups_2024-Update
At4g14170 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.03 Orthogroups_2024-Update
Bradi1g00381 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.F03378.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G168170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM5G811022 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G057300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G172800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g68490 No alias tetratricopeptide-like helical, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g49920 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00010496-RA No alias (at2g22070 : 627.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00026226-RA No alias (at3g46790 : 588.0) Encodes a member of a PCMP (plant... 0.02 Orthogroups_2024-Update
PSME_00034399-RA No alias (at4g33170 : 426.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00045505-RA No alias (at2g22070 : 613.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
Potri.004G178200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G006700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G203900.1 No alias RNA editing factor *(OTP87) 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G187600.1 No alias processivity component *(REV7) of DNA polymerase zeta complex 0.02 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G189200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen02g024180 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g017250 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005342 organic acid transmembrane transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015171 amino acid transmembrane transporter activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 352 376
IPR002885 Pentatricopeptide_repeat 176 222
IPR002885 Pentatricopeptide_repeat 75 124
IPR002885 Pentatricopeptide_repeat 278 324
IPR032867 DYW_dom 451 574
No external refs found!