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  5. Solyc08g028900

Solyc08g028900


Description : DNA-directed RNA polymerase subunit beta'' (AHRD V3.3 *-* RPOC2_SOLBU)


Gene families : OG_42_0001520 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001520_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g028900
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Bradi1g39195 No alias DNA-directed RNA polymerase family protein 0.03 Orthogroups_2024-Update
Pp1s207_89V6 No alias DNA-directed RNA polymerase beta'' chain, putative... 0.02 Orthogroups_2024-Update
Solyc01g017510 No alias LOW QUALITY:DNA-directed RNA polymerase subunit beta''... 0.04 Orthogroups_2024-Update
Solyc01g056330 No alias LOW QUALITY:DNA-directed RNA polymerase subunit beta''... 0.03 Orthogroups_2024-Update
Solyc11g007260 No alias LOW QUALITY:DNA-directed RNA polymerase subunit beta''... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!