LOC_Os06g33600

Description : cyclic nucleotide-gated ion channel 1, putative, expressed

Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os06g33600
Cluster	HCCA clusters: cluster_0101

Target	Alias	Description	ECC score	Gene Family Method
At1g15990	No alias	Putative cyclic nucleotide-gated ion channel 7...	0.02	Orthogroups_2024-Update
Brara.I04465.1	No alias	cyclic nucleotide-gated cation channel *(CNGC)	0.02	Orthogroups_2024-Update
GRMZM2G161800	No alias	cyclic nucleotide-binding transporter 1	0.04	Orthogroups_2024-Update
GRMZM5G858887	No alias	Cyclic nucleotide-regulated ion channel family protein	0.02	Orthogroups_2024-Update
Glyma.06G184000	No alias	cyclic nucleotide-gated channel 16	0.02	Orthogroups_2024-Update
LOC_Os03g55100	No alias	cyclic nucleotide-gated ion channel 2, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os04g55080	No alias	cyclic nucleotide-gated ion channel, putative, expressed	0.03	Orthogroups_2024-Update
Seita.8G055000.1	No alias	cyclic nucleotide-gated cation channel *(CNGC)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan predictions

Type	GO Term	Name	Evidence	Source
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005821	Ion_trans_dom	55	237

External Links

No external refs found!