LOC_Os06g39708


Description : photosystem II P680 chlorophyll A apoprotein, putative, expressed


Gene families : OG_42_0002336 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002336_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g39708
Cluster HCCA clusters: cluster_0134

Target Alias Description ECC score Gene Family Method Actions
evm.model.contig_2297.1 No alias (p09447|psbb_secce : 447.0) Photosystem II P680... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA InterProScan predictions
BP GO:0009767 photosynthetic electron transport chain IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016168 chlorophyll binding IEA InterProScan predictions
BP GO:0019684 photosynthesis, light reaction IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0032048 cardiolipin metabolic process IEP Predicted GO
BP GO:0032049 cardiolipin biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046471 phosphatidylglycerol metabolic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0070567 cytidylyltransferase activity IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 1 500
No external refs found!