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  5. LOC_Os06g40860

LOC_Os06g40860


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g40860
Cluster HCCA clusters: cluster_0093

Target Alias Description ECC score Gene Family Method Actions
At5g39680 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.02 Orthogroups_2024-Update
GRMZM2G057176 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G035630.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G040610.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G111860.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Potri.002G245200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 287 309
IPR002885 Pentatricopeptide_repeat 483 506
IPR002885 Pentatricopeptide_repeat 315 340
IPR002885 Pentatricopeptide_repeat 207 255
IPR002885 Pentatricopeptide_repeat 409 455
No external refs found!