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  5. LOC_Os06g42700

LOC_Os06g42700


Description : zinc finger, C3HC4 type domain containing protein, expressed


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g42700
Cluster HCCA clusters: cluster_0066

Target Alias Description ECC score Gene Family Method Actions
A4A49_11116 No alias putative e3 ubiquitin-protein ligase rhc1a 0.02 Orthogroups_2024-Update
A4A49_25008 No alias e3 ubiquitin-protein ligase cip8 0.03 Orthogroups_2024-Update
At5g64920 No alias CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6] 0.02 Orthogroups_2024-Update
Brara.I03890.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
GRMZM2G122848 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G157855 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G108300 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Glyma.09G165200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G218200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G034800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00250_0090 kfl00250_0090_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
PSME_00021656-RA No alias (at3g46620 : 181.0) zinc finger (C3HC4-type RING finger)... 0.02 Orthogroups_2024-Update
Potri.012G036700 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G029300 No alias RING-H2 finger C1A 0.02 Orthogroups_2024-Update
Pp1s161_109V6 No alias No description available 0.01 Orthogroups_2024-Update
Pp1s295_6V6 No alias protein binding protein 0.02 Orthogroups_2024-Update
Sobic.004G074600.2 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.010G199100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
evm.model.contig_2017.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_2070.1 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 264 305
No external refs found!