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  5. LOC_Os06g43790

LOC_Os06g43790


Description : transcription initiation factor TFIID subunit 1, putative, expressed


Gene families : OG_42_0004219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g43790
Cluster HCCA clusters: cluster_0107

Target Alias Description ECC score Gene Family Method Actions
Bradi1g30648 No alias HAC13 protein (HAC13) 0.03 Orthogroups_2024-Update
Brara.H00591.1 No alias component *(HAF/TAF1) of SAGA transcription co-activator... 0.02 Orthogroups_2024-Update
PSME_00019993-RA No alias (at1g32750 : 182.0) This gene is predicted to encode a... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR009067 TAF_II_230-bd 22 65
IPR022591 TFIID_sub1_DUF3591 886 1135
IPR022591 TFIID_sub1_DUF3591 553 863
IPR000626 Ubiquitin_dom 640 708
IPR001487 Bromodomain 1715 1789
No external refs found!