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  5. LOC_Os06g45640

LOC_Os06g45640


Description : core histone H2A/H2B/H3/H4, putative, expressed


Gene families : OG_42_0000527 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g45640
Cluster HCCA clusters: cluster_0133

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G311316 No alias nuclear factor Y, subunit C2 0.04 Orthogroups_2024-Update
Glyma.15G261300 No alias nuclear factor Y, subunit C2 0.02 Orthogroups_2024-Update
LOC_Os08g38780 No alias core histone H2A/H2B/H3/H4, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00054522-RA No alias "(at1g56170 : 116.0) Encodes a protein with similarity... 0.02 Orthogroups_2024-Update
Potri.013G025000 No alias nuclear factor Y, subunit C9 0.03 Orthogroups_2024-Update
Pp1s315_9V6 No alias ccaat-binding transcription 0.02 Orthogroups_2024-Update
Pp1s409_32V6 No alias T6H22.3; transcription factor, putative [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005534 galactose binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0048029 monosaccharide binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 101 164
No external refs found!