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  5. LOC_Os06g46400

LOC_Os06g46400


Description : ATCPSF30/CPSF30, putative, expressed


Gene families : OG_42_0005286 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g46400
Cluster HCCA clusters: cluster_0119

Target Alias Description ECC score Gene Family Method Actions
Cre24.g755647 No alias cleavage and polyadenylation specificity factor 30 0.02 Orthogroups_2024-Update
PSME_00025100-RA No alias (at1g30460 : 351.0) Encodes AtCPSF30, the 30-KDa subunit... 0.02 Orthogroups_2024-Update
Potri.011G089901 No alias cleavage and polyadenylation specificity factor 30 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007275 YTH_domain 260 394
No external refs found!