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  5. LOC_Os06g46720

LOC_Os06g46720


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000042 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g46720
Cluster HCCA clusters: cluster_0083

Target Alias Description ECC score Gene Family Method Actions
A4A49_28357 No alias putative mitochondrial protein 0.03 Orthogroups_2024-Update
Glyma.06G173600 No alias Function unknown 0.03 Orthogroups_2024-Update
LOC_Os12g43060 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Sobic.002G120601.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen11g019660 No alias zinc-binding in reverse transcriptase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
InterPro domains Description Start Stop
IPR026960 RVT-Znf 1293 1377
IPR000477 RT_dom 734 979
No external refs found!