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  5. LOC_Os06g47350

LOC_Os06g47350


Description : RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed


Gene families : OG_42_0004330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004330_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g47350
Cluster HCCA clusters: cluster_0087

Target Alias Description ECC score Gene Family Method Actions
Brara.E00953.1 No alias basal transcription factor *(TFIa/RRN3) 0.02 Orthogroups_2024-Update
Glyma.16G112800 No alias RNA polymerase I specific transcription initiation... 0.02 Orthogroups_2024-Update
MA_158801g0010 No alias (at1g30590 : 159.0) RNA polymerase I specific... 0.02 Orthogroups_2024-Update
Mp6g17000.1 No alias basal transcription factor (TFIa/RRN3) 0.03 Orthogroups_2024-Update
PSME_00008379-RA No alias (at2g34750 : 231.0) RNA polymerase I specific... 0.02 Orthogroups_2024-Update
Sopen02g027000 No alias RNA polymerase I specific transcription initiation factor RRN3 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
CC GO:0030289 protein phosphatase 4 complex IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007991 RNA_pol_I_trans_ini_fac_RRN3 16 540
No external refs found!