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  5. LOC_Os06g48040

LOC_Os06g48040


Description : zinc finger, C3HC4 type domain containing protein, expressed


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g48040
Cluster HCCA clusters: cluster_0035

Target Alias Description ECC score Gene Family Method Actions
At2g37150 No alias RING/U-box superfamily protein... 0.03 Orthogroups_2024-Update
Bradi5g24120 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G122223 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G103300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G039800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G138700 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.19G180000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Kfl00027_0540 kfl00027_0540_v1.1 (at5g24870 : 106.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Seita.7G272600.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sopen10g021330 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0005534 galactose binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Predicted GO
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
BP GO:0032787 monocarboxylic acid metabolic process IEP Predicted GO
CC GO:0033176 proton-transporting V-type ATPase complex IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
MF GO:0048029 monosaccharide binding IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 524 566
No external refs found!