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  5. LOC_Os06g48950

LOC_Os06g48950


Description : auxin response factor 19, putative, expressed


Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g48950
Cluster HCCA clusters: cluster_0126

Target Alias Description ECC score Gene Family Method Actions
117217 No alias auxin response factor 6 0.03 Orthogroups_2024-Update
A4A49_30370 No alias auxin response factor 11 0.03 Orthogroups_2024-Update
At2g46530 No alias Auxin response factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY6] 0.03 Orthogroups_2024-Update
Bradi3g04920 No alias auxin response factor 6 0.04 Orthogroups_2024-Update
Brara.B03784.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I04264.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G475263 No alias auxin response factor 11 0.02 Orthogroups_2024-Update
Glyma.01G103500 No alias auxin response factor 9 0.03 Orthogroups_2024-Update
HORVU7Hr1G106280.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os04g36054 No alias auxin response factor 9, putative, expressed 0.03 Orthogroups_2024-Update
Potri.003G163600 No alias auxin response factor 2 0.03 Orthogroups_2024-Update
Potri.018G063000 No alias auxin response factor 19 0.03 Orthogroups_2024-Update
Seita.3G028100.1 No alias ARF-type transcription factor 0.02 Orthogroups_2024-Update
Seita.8G135700.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.006G278900.1 No alias ARF-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.010G073600.1 No alias ARF-type transcription factor & auxin signal mediator... 0.03 Orthogroups_2024-Update
Sopen02g022450 No alias Auxin response factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
BP GO:0009725 response to hormone IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
MF GO:0004615 phosphomannomutase activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009225 nucleotide-sugar metabolic process IEP Predicted GO
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Predicted GO
BP GO:0009298 GDP-mannose biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
BP GO:0019673 GDP-mannose metabolic process IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 992 1079
IPR010525 Auxin_resp 247 330
IPR003340 B3_DNA-bd 121 222
No external refs found!