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LOC_Os07g05940


Description : 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed


Gene families : OG_42_0000424 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000424_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os07g05940
Cluster HCCA clusters: cluster_0057

Target Alias Description ECC score Gene Family Method Actions
A4A49_16982 No alias 9-cis-epoxycarotenoid dioxygenase nced1, chloroplastic 0.02 Orthogroups_2024-Update
HORVU5Hr1G008050.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
HORVU5Hr1G054970.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
LOC_Os12g42280 No alias 9-cis-epoxycarotenoid dioxygenase 1, chloroplast... 0.03 Orthogroups_2024-Update
PSME_00022248-RA No alias (at3g63520 : 290.0) Encodes a protein with... 0.02 Orthogroups_2024-Update
Potri.011G084100 No alias nine-cis-epoxycarotenoid dioxygenase 5 0.02 Orthogroups_2024-Update
Seita.3G391000.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR004294 Carotenoid_Oase 106 573
No external refs found!