LOC_Os07g08660

Description : 40S ribosomal protein S15, putative, expressed

Gene families : OG_42_0001901 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001901_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os07g08660
Cluster	HCCA clusters: cluster_0072

Target	Alias	Description	ECC score	Gene Family Method
172403	No alias	Ribosomal protein S19 family protein	0.05	Orthogroups_2024-Update
At5g09510	No alias	40S ribosomal protein S15-4...	0.02	Orthogroups_2024-Update
Bradi1g05340	No alias	Ribosomal protein S19 family protein	0.04	Orthogroups_2024-Update
Bradi1g55280	No alias	Ribosomal protein S19 family protein	0.04	Orthogroups_2024-Update
Brara.H03058.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Brara.I05501.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Brara.J00241.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Cre08.g360900	No alias	Ribosomal protein S19 family protein	0.07	Orthogroups_2024-Update
Glyma.07G269600	No alias	Ribosomal protein S19 family protein	0.03	Orthogroups_2024-Update
Glyma.08G042300	No alias	Ribosomal protein S19 family protein	0.02	Orthogroups_2024-Update
Glyma.17G004300	No alias	Ribosomal protein S19 family protein	0.04	Orthogroups_2024-Update
HORVU2Hr1G057430.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Kfl00160_0050	kfl00160_0050_v1.1	(p31674\|rs15_orysa : 187.0) 40S ribosomal protein S15 -...	0.04	Orthogroups_2024-Update
MA_14543g0010	No alias	(p31674\|rs15_orysa : 245.0) 40S ribosomal protein S15 -...	0.02	Orthogroups_2024-Update
Mp3g15000.1	No alias	component RPS15 of SSU proteome	0.01	Orthogroups_2024-Update
PSME_00033145-RA	No alias	(p31674\|rs15_orysa : 265.0) 40S ribosomal protein S15 -...	0.05	Orthogroups_2024-Update
Pp1s13_413V6	No alias	40s ribosomal protein s15	0.06	Orthogroups_2024-Update
Pp1s223_96V6	No alias	40s ribosomal protein s15	0.02	Orthogroups_2024-Update
Pp1s47_42V6	No alias	40s ribosomal protein s15	0.09	Orthogroups_2024-Update
Pp1s91_124V6	No alias	40s ribosomal protein s15	0.02	Orthogroups_2024-Update
Seita.2G059900.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Seita.9G053600.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Sobic.001G054900.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Sobic.002G056200.1	No alias	component *(uS19) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Solyc02g082000	No alias	Ribosomal protein S19 family protein (AHRD V3.3 *** AT5G09500.1)	0.08	Orthogroups_2024-Update
Solyc06g053820	No alias	Chloroplast omega-3 fatty acid desaturase (AHRD V3.3 --*...	0.07	Orthogroups_2024-Update
Solyc09g083370	No alias	Ribosomal protein S19 family protein (AHRD V3.3 *** AT5G09510.1)	0.03	Orthogroups_2024-Update
Sopen02g026630	No alias	Ribosomal protein S19	0.1	Orthogroups_2024-Update
Sopen06g018940	No alias	Ribosomal protein S19	0.1	Orthogroups_2024-Update
Sopen09g032290	No alias	Ribosomal protein S19	0.03	Orthogroups_2024-Update
evm.model.contig_651.1	No alias	(at5g09500 : 219.0) Ribosomal protein S19 family...	0.1	Orthogroups_2024-Update
evm.model.tig00020830.61	No alias	(p31674\|rs15_orysa : 236.0) 40S ribosomal protein S15 -...	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004061	arylformamidase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
BP	GO:0006449	regulation of translational termination	IEP	Predicted GO
BP	GO:0006452	translational frameshifting	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006568	tryptophan metabolic process	IEP	Predicted GO
BP	GO:0006569	tryptophan catabolic process	IEP	Predicted GO
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Predicted GO
BP	GO:0006586	indolalkylamine metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
BP	GO:0009063	cellular amino acid catabolic process	IEP	Predicted GO
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Predicted GO
BP	GO:0009310	amine catabolic process	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
BP	GO:0016054	organic acid catabolic process	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predicted GO
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0042180	cellular ketone metabolic process	IEP	Predicted GO
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Predicted GO
BP	GO:0042430	indole-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042436	indole-containing compound catabolic process	IEP	Predicted GO
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043244	regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0044106	cellular amine metabolic process	IEP	Predicted GO
BP	GO:0044282	small molecule catabolic process	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0045727	positive regulation of translation	IEP	Predicted GO
BP	GO:0045901	positive regulation of translational elongation	IEP	Predicted GO
BP	GO:0045905	positive regulation of translational termination	IEP	Predicted GO
BP	GO:0046218	indolalkylamine catabolic process	IEP	Predicted GO
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predicted GO
BP	GO:0070189	kynurenine metabolic process	IEP	Predicted GO
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002222	Ribosomal_S19	52	137

External Links

No external refs found!

LOC_Os07g08660

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation