1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g09370

LOC_Os07g09370


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os07g09370
Cluster HCCA clusters: cluster_0065

Target Alias Description ECC score Gene Family Method Actions
173093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
424099 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
82255 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
92008 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_38131 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At1g08070 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Orthogroups_2024-Update
At5g39680 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.03 Orthogroups_2024-Update
Bradi3g51740 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g01440 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.C00179.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G029859 No alias dynamin-like protein 6 0.03 Orthogroups_2024-Update
HORVU0Hr1G009930.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G023100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G019130.5 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g40750 No alias pentatricopeptide domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g27790 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_27147g0010 No alias (at3g49170 : 606.0) embryo defective 2261 (EMB2261);... 0.02 Orthogroups_2024-Update
MA_86628g0010 No alias (at1g11290 : 652.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G311600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G176900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G131800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.02 Orthogroups_2024-Update
Solyc01g007850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.03 Orthogroups_2024-Update
Solyc11g064750 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g065250 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen02g019790 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009512 cytochrome b6f complex IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 213 238
IPR002885 Pentatricopeptide_repeat 314 338
IPR002885 Pentatricopeptide_repeat 242 267
IPR002885 Pentatricopeptide_repeat 101 128
IPR002885 Pentatricopeptide_repeat 277 304
IPR032867 DYW_dom 415 540
IPR002885 Pentatricopeptide_repeat 130 177
No external refs found!