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  5. Solyc08g060840

Solyc08g060840


Description : FAR1 (AHRD V3.3 *** A0A178UYQ0_ARATH)


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g060840
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
At1g76320 No alias Protein FAR1-RELATED SEQUENCE 4... 0.03 Orthogroups_2024-Update
At4g15090 No alias Protein FAR-RED IMPAIRED RESPONSE 1... 0.04 Orthogroups_2024-Update
Bradi2g61631 No alias FAR1-related sequence 5 0.01 Orthogroups_2024-Update
Glyma.09G012900 No alias FAR1-related sequence 10 0.03 Orthogroups_2024-Update
Glyma.09G039300 No alias FAR1-related sequence 11 0.03 Orthogroups_2024-Update
HORVU7Hr1G085020.9 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os03g45300 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Potri.016G018100 No alias FAR1-related sequence 2 0.02 Orthogroups_2024-Update
Seita.9G015500.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
Sopen02g017690 No alias FAR1 DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
CC GO:0009317 acetyl-CoA carboxylase complex IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 563 588
IPR018289 MULE_transposase_dom 273 365
IPR004330 FAR1_DNA_bnd_dom 67 153
No external refs found!