1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g23540

LOC_Os07g23540


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os07g23540
Cluster HCCA clusters: cluster_0021

Target Alias Description ECC score Gene Family Method Actions
Bradi5g20076 No alias PIF1 helicase 0.03 Orthogroups_2024-Update
LOC_Os01g07990 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Seita.6G104400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc07g032810 No alias LOW QUALITY:Helicase-like protein (AHRD V3.3 *-* Q9AYF0_ORYSJ) 0.03 Orthogroups_2024-Update
Solyc07g042790 No alias LOW QUALITY:Helicase-like protein (AHRD V3.3 *** Q9AYF0_ORYSJ) 0.02 Orthogroups_2024-Update
Solyc11g044580 No alias AT hook motif-containing protein, putative, expressed... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEA InterProScan predictions
MF GO:0003678 DNA helicase activity IEA InterProScan predictions
BP GO:0006281 DNA repair IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006270 DNA replication initiation IEP Predicted GO
InterPro domains Description Start Stop
IPR010285 DNA_helicase_pif1-like 1148 1314
IPR010285 DNA_helicase_pif1-like 1105 1147
IPR025476 Helitron_helicase-like 448 612
No external refs found!