1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g28850

LOC_Os07g28850


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os07g28850
Cluster HCCA clusters: cluster_0051

Target Alias Description ECC score Gene Family Method Actions
Brara.J01530.1 No alias siRNA-integrating factor *(AGO) 0.04 Orthogroups_2024-Update
GRMZM2G059033 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
GRMZM2G079080 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.04 Orthogroups_2024-Update
GRMZM2G432075 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Glyma.16G217300 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update
Seita.2G310800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G181000.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.04 Orthogroups_2024-Update
Sobic.006G215000.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.02 Orthogroups_2024-Update
evm.model.contig_752.1 No alias (at5g43810 : 118.0) Encodes a member of the EIF2C... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003100 PAZ_dom 487 590
IPR003165 Piwi 748 1054
IPR032473 Argonaute_Mid_dom 656 713
IPR032472 ArgoL2 600 646
IPR014811 ArgoL1 408 455
IPR032474 Argonaute_N 268 392
No external refs found!