1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g36140

LOC_Os07g36140


Description : core histone H2A/H2B/H3/H4, putative, expressed


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os07g36140
Cluster HCCA clusters: cluster_0049

Target Alias Description ECC score Gene Family Method Actions
At5g02560 No alias Histone H2A [Source:UniProtKB/TrEMBL;Acc:F4KCF4] 0.03 Orthogroups_2024-Update
Brara.A01693.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Brara.H00220.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Cre13.g591150 No alias histone H2A 10 0.02 Orthogroups_2024-Update
HORVU4Hr1G090910.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
MA_924620g0010 No alias (q2hu68|h2a1_medtr : 180.0) Probable histone H2A.1 -... 0.03 Orthogroups_2024-Update
PSME_00005538-RA No alias (p35063|h2ax_picab : 158.0) Histone H2AX - Picea abies... 0.02 Orthogroups_2024-Update
PSME_00008207-RA No alias (p02276|h2a2_wheat : 135.0) Histone H2A.2.1 - Triticum... 0.02 Orthogroups_2024-Update
Pp1s452_4V6 No alias histone 2 0.03 Orthogroups_2024-Update
Sobic.002G276000.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.002G329900.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.009G164900.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Sopen09g029130 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 93 127
IPR007125 Histone_H2A/H2B/H3 13 90
No external refs found!
Note: