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  5. LOC_Os07g41310

LOC_Os07g41310


Description : COBRA, putative, expressed


Gene families : OG_42_0000486 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000486_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os07g41310
Cluster HCCA clusters: cluster_0048

Target Alias Description ECC score Gene Family Method Actions
Brara.C04215.1 No alias regulatory protein *(COB) of cellulose-hemicellulose... 0.03 Orthogroups_2024-Update
GRMZM5G826714 No alias COBRA-like extracellular glycosyl-phosphatidyl... 0.02 Orthogroups_2024-Update
LOC_Os05g32110 No alias COBRA, putative, expressed 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0010215 cellulose microfibril organization IEA InterProScan predictions
BP GO:0016049 cell growth IEA InterProScan predictions
CC GO:0031225 anchored component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004529 exodeoxyribonuclease activity IEP Predicted GO
MF GO:0004536 deoxyribonuclease activity IEP Predicted GO
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008297 single-stranded DNA exodeoxyribonuclease activity IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
MF GO:0008409 5'-3' exonuclease activity IEP Predicted GO
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0035312 5'-3' exodeoxyribonuclease activity IEP Predicted GO
MF GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006918 COBRA_pln 52 215
No external refs found!