LOC_Os07g44170

Description : pentatricopeptide repeat domain containing protein, putative, expressed

Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os07g44170
Cluster	HCCA clusters: cluster_0060

Target	Alias	Description	ECC score	Gene Family Method
Bradi5g22640	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
HORVU0Hr1G018170.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU7Hr1G090460.2	No alias	Unknown function	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Predicted GO
MF	GO:0004222	metalloendopeptidase activity	IEP	Predicted GO
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
BP	GO:0007010	cytoskeleton organization	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predicted GO
CC	GO:0009523	photosystem II	IEP	Predicted GO
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Predicted GO
CC	GO:0019898	extrinsic component of membrane	IEP	Predicted GO
CC	GO:1990204	oxidoreductase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	527	573
IPR002885	Pentatricopeptide_repeat	324	368
IPR002885	Pentatricopeptide_repeat	429	457
IPR002885	Pentatricopeptide_repeat	299	318
IPR002885	Pentatricopeptide_repeat	121	149
IPR002885	Pentatricopeptide_repeat	601	627
IPR002885	Pentatricopeptide_repeat	227	256
IPR002885	Pentatricopeptide_repeat	199	223
IPR002885	Pentatricopeptide_repeat	94	118

External Links

No external refs found!