LOC_Os07g46170

Description : OsRhmbd13 - Putative Rhomboid homologue, expressed

Gene families : OG_42_0003310 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os07g46170
Cluster	HCCA clusters: cluster_0136

Target	Alias	Description	ECC score	Gene Family Method	Actions
GRMZM2G157749	No alias	rhomboid protein-related	0.03	Orthogroups_2024-Update
Kfl00826_0030	kfl00826_0030_v1.1	(at3g07950 : 250.0) rhomboid protein-related; FUNCTIONS...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
MF	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	IEP	Predicted GO
MF	GO:0008417	fucosyltransferase activity	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
BP	GO:0016255	attachment of GPI anchor to protein	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0030686	90S preribosome	IEP	Predicted GO
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predicted GO
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
BP	GO:0042546	cell wall biogenesis	IEP	Predicted GO
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
CC	GO:0044432	endoplasmic reticulum part	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013861	DUF1751_Mem_euk	56	154

External Links

No external refs found!