LOC_Os07g46810

Description : retrotransposon protein, putative, unclassified, expressed

Gene families : OG_42_0000058 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os07g46810
Cluster	HCCA clusters: cluster_0107

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g48595	No alias	Function unknown	0.03	Orthogroups_2024-Update
HORVU1Hr1G059830.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU2Hr1G024690.4	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os05g01390	No alias	retrotransposon protein, putative, unclassified	0.02	Orthogroups_2024-Update
Seita.1G326300.1	No alias	Unknown function	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0004556	alpha-amylase activity	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
MF	GO:0005543	phospholipid binding	IEP	Predicted GO
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
MF	GO:0016160	amylase activity	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR026960	RVT-Znf	53	137

External Links

No external refs found!