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  5. LOC_Os07g46920

LOC_Os07g46920


Description : sex determination protein tasselseed-2, putative, expressed


Gene families : OG_42_0000111 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os07g46920
Cluster HCCA clusters: cluster_0119

Target Alias Description ECC score Gene Family Method Actions
A4A49_10897 No alias xanthoxin dehydrogenase 0.03 Orthogroups_2024-Update
At3g51680 No alias Short-chain dehydrogenase reductase 2a... 0.03 Orthogroups_2024-Update
Brara.A02632.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G021560.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Mp1g06800.1 No alias Short-chain dehydrogenase reductase 3b OS=Arabidopsis... 0.02 Orthogroups_2024-Update
Mp3g24690.1 No alias Momilactone A synthase OS=Oryza sativa subsp. japonica... 0.03 Orthogroups_2024-Update
PSME_00002674-RA No alias (at3g51680 : 247.0) NAD(P)-binding Rossmann-fold... 0.02 Orthogroups_2024-Update
PSME_00005454-RA No alias (at3g51680 : 354.0) NAD(P)-binding Rossmann-fold... 0.03 Orthogroups_2024-Update
PSME_00021248-RA No alias (p50160|ts2_maize : 143.0) Sex determination protein... 0.03 Orthogroups_2024-Update
PSME_00047761-RA No alias (at3g51680 : 270.0) NAD(P)-binding Rossmann-fold... 0.02 Orthogroups_2024-Update
Sobic.001G402200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc04g071940 No alias NAD(P)-binding Rossmann-fold superfamily protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc08g028690 No alias NAD(P)-binding Rossmann-fold superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc12g056610 No alias NAD(P)-binding Rossmann-fold superfamily protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc12g056710 No alias NAD(P)-binding Rossmann-fold superfamily protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g001510 No alias short chain dehydrogenase 0.03 Orthogroups_2024-Update
Sopen10g034840 No alias short chain dehydrogenase 0.03 Orthogroups_2024-Update
Sopen12g029250 No alias Enoyl-(Acyl carrier protein) reductase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!