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  5. LOC_Os07g47720

LOC_Os07g47720


Description : PPR repeat domain containing protein, putative, expressed


Gene families : OG_42_0008910 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008910_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os07g47720
Cluster HCCA clusters: cluster_0059

Target Alias Description ECC score Gene Family Method Actions
Potri.015G039300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 452 501
IPR002885 Pentatricopeptide_repeat 380 428
IPR002885 Pentatricopeptide_repeat 236 284
IPR002885 Pentatricopeptide_repeat 557 600
IPR002885 Pentatricopeptide_repeat 125 154
IPR002885 Pentatricopeptide_repeat 526 555
No external refs found!