LOC_Os08g05800

Description : retrotransposon protein, putative, unclassified, expressed

Gene families : OG_42_0000068 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os08g05800
Cluster	HCCA clusters: cluster_0117

Target	Alias	Description	ECC score	Gene Family Method
Brara.H00254.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Glyma.18G093600	No alias	NB-ARC domain-containing disease resistance protein	0.01	Orthogroups_2024-Update
Seita.8G064700.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc04g009250	No alias	Nbs-lrr resistance protein (AHRD V3.3 *** A0A061FZT5_THECC)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR026960	RVT-Znf	1077	1141
IPR002182	NB-ARC	183	424

External Links

No external refs found!