LOC_Os08g05940

Description : retrotransposon protein, putative, unclassified, expressed

Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os08g05940
Cluster	HCCA clusters: cluster_0112

Target	Alias	Description	ECC score	Gene Family Method	Actions
Kfl00243_0080	kfl00243_0080_v1.1	(at5g60040 : 1445.0) Encodes a subunit of RNA polymerase...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005665	RNA polymerase II, core complex	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0006366	transcription by RNA polymerase II	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044451	nucleoplasm part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	Predicted GO
BP	GO:0006486	protein glycosylation	IEP	Predicted GO
BP	GO:0008272	sulfate transport	IEP	Predicted GO
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015698	inorganic anion transport	IEP	Predicted GO
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Predicted GO
MF	GO:0033897	ribonuclease T2 activity	IEP	Predicted GO
MF	GO:0042393	histone binding	IEP	Predicted GO
BP	GO:0043413	macromolecule glycosylation	IEP	Predicted GO
MF	GO:0051082	unfolded protein binding	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO
BP	GO:0072348	sulfur compound transport	IEP	Predicted GO
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	101	221
IPR007073	RNA_pol_Rpb1_7	1	100
IPR000684	RNA_pol_II_repeat_euk	427	440
IPR000684	RNA_pol_II_repeat_euk	546	559
IPR000684	RNA_pol_II_repeat_euk	532	545
IPR000684	RNA_pol_II_repeat_euk	434	447
IPR000684	RNA_pol_II_repeat_euk	385	398
IPR000684	RNA_pol_II_repeat_euk	378	391
IPR000684	RNA_pol_II_repeat_euk	420	433
IPR000684	RNA_pol_II_repeat_euk	399	412
IPR000684	RNA_pol_II_repeat_euk	490	503
IPR000684	RNA_pol_II_repeat_euk	448	461
IPR000684	RNA_pol_II_repeat_euk	371	384
IPR000684	RNA_pol_II_repeat_euk	483	496
IPR000684	RNA_pol_II_repeat_euk	578	589
IPR000684	RNA_pol_II_repeat_euk	455	468
IPR000684	RNA_pol_II_repeat_euk	518	531
IPR000684	RNA_pol_II_repeat_euk	441	454
IPR000684	RNA_pol_II_repeat_euk	476	489
IPR000684	RNA_pol_II_repeat_euk	413	426
IPR000684	RNA_pol_II_repeat_euk	469	482
IPR000684	RNA_pol_II_repeat_euk	497	510
IPR000684	RNA_pol_II_repeat_euk	462	475
IPR000684	RNA_pol_II_repeat_euk	504	517
IPR000684	RNA_pol_II_repeat_euk	583	596

External Links

No external refs found!

LOC_Os08g05940

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation