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  5. Solyc08g067200

Solyc08g067200


Description : Dicer-like protein 3 (AHRD V3.3 *-* X4Y6L7_SOLLC)


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g067200
Cluster HCCA clusters: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G153627 No alias dicer-like 2 0.03 Orthogroups_2024-Update
Glyma.19G254900 No alias dicer-like 2 0.04 Orthogroups_2024-Update
Kfl00384_0060 kfl00384_0060_v1.1 (at1g01040 : 265.0) Encodes a Dicer homolog. Dicer is a... 0.04 Orthogroups_2024-Update
Seita.9G179100.1 No alias endoribonuclease (DCL2) of transacting siRNA pathway 0.04 Orthogroups_2024-Update
Sobic.001G180000.2 No alias endoribonuclease (DCL2) of transacting siRNA pathway 0.03 Orthogroups_2024-Update
Sobic.007G106900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
evm.model.tig00021135.41 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 38 199
No external refs found!