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LOC_Os08g07790


Description : CRS2-associated factor 2, mitochondrial precursor, putative, expressed


Gene families : OG_42_0001286 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g07790
Cluster HCCA clusters: cluster_0084

Target Alias Description ECC score Gene Family Method Actions
A4A49_15851 No alias crs2-associated factor 1, mitochondrial 0.04 Orthogroups_2024-Update
Bradi3g15650 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
GRMZM2G087395 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
PSME_00011060-RA No alias (at1g23400 : 167.0) Promotes the splicing of chloroplast... 0.04 Orthogroups_2024-Update
Seita.9G384400.1 No alias component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 Orthogroups_2024-Update
Solyc05g018240 No alias GSVIVT00005628001, HT7 (AHRD V3.3 *** A0A0A9GN13_ARUDO) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 157 242
IPR001890 RNA-binding_CRM 277 360
No external refs found!