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  5. LOC_Os08g08820

LOC_Os08g08820


Description : homeobox and START domains containing protein, putative, expressed


Gene families : OG_42_0000114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g08820
Cluster HCCA clusters: cluster_0059

Target Alias Description ECC score Gene Family Method Actions
At1g05230 No alias AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8] 0.02 Orthogroups_2024-Update
Brara.E01141.1 No alias HD-ZIP IV-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.08G204700 No alias HD-ZIP IV family of homeobox-leucine zipper protein with... 0.02 Orthogroups_2024-Update
Glyma.09G143700 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.02 Orthogroups_2024-Update
Glyma.09G265200 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.02 Orthogroups_2024-Update
Glyma.11G003400 No alias protodermal factor 2 0.02 Orthogroups_2024-Update
HORVU1Hr1G050620.18 No alias HD-ZIP IV-type transcription factor 0.02 Orthogroups_2024-Update
MA_93471g0010 No alias (at4g00730 : 895.0) Encodes a homeodomain protein of the... 0.03 Orthogroups_2024-Update
Sobic.006G183200.1 No alias HD-ZIP IV-type transcription factor 0.02 Orthogroups_2024-Update
Sopen02g024970 No alias START domain 0.02 Orthogroups_2024-Update
Sopen03g028900 No alias START domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0008289 lipid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 300 519
IPR001356 Homeobox_dom 107 162
No external refs found!