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  5. LOC_Os08g10244

LOC_Os08g10244


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g10244
Cluster HCCA clusters: cluster_0067

Target Alias Description ECC score Gene Family Method Actions
Kfl00514_0110 kfl00514_0110_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os02g17292 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Solyc02g021130 No alias No description available 0.06 Orthogroups_2024-Update
Solyc10g036800 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g010380 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g013800 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.02 Orthogroups_2024-Update
Sopen04g019550 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen04g022550 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g005780 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen08g020970 No alias Reverse transcriptase-like 0.02 Orthogroups_2024-Update
Sopen09g020310 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen10g007750 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g008020 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g011720 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen12g011940 No alias Integrase core domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000477 RT_dom 45 204
No external refs found!