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  5. LOC_Os08g13390

LOC_Os08g13390


Description : expressed protein


Gene families : OG_42_0004814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g13390
Cluster HCCA clusters: cluster_0112

Target Alias Description ECC score Gene Family Method Actions
Mp6g08570.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Pp1s4_248V6 No alias F9O13.11; expressed protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Pp1s57_67V6 No alias F9O13.11; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019915 lipid storage IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR021139 NYN_limkain-b1 51 189
IPR025605 OST-HTH/LOTUS_dom 457 520
IPR025605 OST-HTH/LOTUS_dom 321 386
No external refs found!