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LOC_Os08g14020


Description : retrotransposon protein, putative, Ty1-copia subclass, expressed


Gene families : OG_42_0000839 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g14020
Cluster HCCA clusters: cluster_0118

Target Alias Description ECC score Gene Family Method Actions
Kfl00135_0200 kfl00135_0200_v1.1 (at3g23600 : 86.7) alpha/beta-Hydrolases superfamily... 0.02 Orthogroups_2024-Update
Pp1s285_15V6 No alias endo- - -beta-d- 0.02 Orthogroups_2024-Update
Seita.6G014300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.6G014900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G090424.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR002925 Dienelactn_hydro 61 277
No external refs found!