LOC_Os08g16460

Description : NBS-LRR disease resistance protein, putative, expressed

Gene families : OG_42_0000039 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os08g16460
Cluster	HCCA clusters: cluster_0095

Target	Alias	Description	ECC score	Gene Family Method
HORVU0Hr1G031060.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os02g20210	No alias	disease resistance protein RGA1, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os05g23250	No alias	Leucine Rich Repeat family protein, expressed	0.04	Orthogroups_2024-Update
LOC_Os08g43000	No alias	CC-NBS-LRR, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g43050	No alias	disease resistance protein RGA2, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os11g10570	No alias	NBS-LRR disease resistance protein, putative, expressed	0.02	Orthogroups_2024-Update
Seita.3G402500.1	No alias	Unknown function	0.01	Orthogroups_2024-Update
Seita.6G233200.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Seita.8G234500.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sopen11g024570	No alias	NB-ARC domain	0.02	Orthogroups_2024-Update
Sopen11g028330	No alias	NB-ARC domain	0.02	Orthogroups_2024-Update
Sopen11g030020	No alias	Leucine rich repeat	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	56	270
IPR001611	Leu-rich_rpt	660	702
IPR001611	Leu-rich_rpt	491	552
IPR001611	Leu-rich_rpt	590	611
IPR001611	Leu-rich_rpt	566	587
IPR001611	Leu-rich_rpt	447	467

External Links

No external refs found!