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  5. LOC_Os08g21350

LOC_Os08g21350


Description : cig3, putative, expressed


Gene families : OG_42_0003131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g21350
Cluster HCCA clusters: cluster_0082

Target Alias Description ECC score Gene Family Method Actions
At5g19400 No alias Protein SMG7 [Source:UniProtKB/Swiss-Prot;Acc:A9QM73] 0.02 Orthogroups_2024-Update
Mp8g12080.1 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.01 Orthogroups_2024-Update
Sobic.002G146300.1 No alias Nonsense-Mediated mRNA Decay protein *(SMG7) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0003689 DNA clamp loader activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
CC GO:0005663 DNA replication factor C complex IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0033170 protein-DNA loading ATPase activity IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR019458 EST1 71 182
IPR018834 DNA/RNA-bd_Est1-type 197 534
No external refs found!