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LOC_Os08g25490


Description : berberine and berberine like domain containing protein, expressed


Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g25490
Cluster HCCA clusters: cluster_0140

Target Alias Description ECC score Gene Family Method Actions
A4A49_11751 No alias reticuline oxidase-like protein 0.02 Orthogroups_2024-Update
At4g20820 No alias Berberine bridge enzyme-like 18... 0.01 Orthogroups_2024-Update
MA_10428737g0020 No alias (at5g44380 : 85.1) FAD-binding Berberine family protein;... 0.02 Orthogroups_2024-Update
PSME_00033064-RA No alias (at4g20860 : 370.0) FAD-binding Berberine family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
MF GO:0050660 flavin adenine dinucleotide binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006094 Oxid_FAD_bind_N 43 188
IPR012951 BBE 448 513
No external refs found!