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  5. LOC_Os08g27740

LOC_Os08g27740


Description : transposon protein, putative, unclassified, expressed


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g27740
Cluster HCCA clusters: cluster_0039

Target Alias Description ECC score Gene Family Method Actions
Bradi1g72196 No alias FAR1-related sequence 5 0.01 Orthogroups_2024-Update
Bradi2g04713 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Glyma.02G273500 No alias FAR1-related sequence 3 0.02 Orthogroups_2024-Update
HORVU2Hr1G102940.1 No alias FRS/FRF-type transcription factor 0.04 Orthogroups_2024-Update
HORVU7Hr1G015880.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os01g64210 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os03g56630 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g14020 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Sobic.004G234766.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.010G181200.1 No alias FRS/FRF-type transcription factor 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 709 743
IPR018289 MULE_transposase_dom 442 533
IPR004330 FAR1_DNA_bnd_dom 210 333
No external refs found!