1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g074240

Solyc08g074240


Description : 40S ribosomal protein S6 (AHRD V3.3 *** K4CME5_SOLLC)


Gene families : OG_42_0001972 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001972_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g074240
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
172795 No alias Ribosomal protein S6e 0.25 Orthogroups_2024-Update
A4A49_38773 No alias 40s ribosomal protein s6-2 0.07 Orthogroups_2024-Update
A4A49_58422 No alias 40s ribosomal protein s6-1 0.2 Orthogroups_2024-Update
A4A49_61057 No alias 40s ribosomal protein s6-1 0.18 Orthogroups_2024-Update
At4g31700 No alias 40S ribosomal protein S6-1... 0.05 Orthogroups_2024-Update
At5g10360 No alias 40S ribosomal protein S6 [Source:UniProtKB/TrEMBL;Acc:A0A178USM6] 0.02 Orthogroups_2024-Update
Bradi1g21320 No alias Ribosomal protein S6e 0.11 Orthogroups_2024-Update
Bradi1g60730 No alias Ribosomal protein S6e 0.22 Orthogroups_2024-Update
Brara.A00605.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Brara.C00414.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Brara.H01340.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Brara.J02318.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Cre09.g400650 No alias Ribosomal protein S6e 0.09 Orthogroups_2024-Update
GRMZM2G054136 No alias Ribosomal protein S6e 0.03 Orthogroups_2024-Update
GRMZM5G851698 No alias Ribosomal protein S6e 0.13 Orthogroups_2024-Update
Glyma.07G198600 No alias Ribosomal protein S6e 0.2 Orthogroups_2024-Update
Glyma.08G343800 No alias Ribosomal protein S6e 0.14 Orthogroups_2024-Update
Glyma.13G177800 No alias Ribosomal protein S6e 0.16 Orthogroups_2024-Update
Glyma.13G237800 No alias Ribosomal protein S6e 0.18 Orthogroups_2024-Update
Glyma.15G075600 No alias Ribosomal protein S6e 0.19 Orthogroups_2024-Update
Glyma.18G151800 No alias Ribosomal protein S6e 0.07 Orthogroups_2024-Update
HORVU2Hr1G010870.8 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
HORVU2Hr1G010890.2 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
HORVU2Hr1G029890.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Kfl00053_0450 kfl00053_0450_v1.1 (q9m3v8|rs6_aspof : 374.0) 40S ribosomal protein S6 -... 0.11 Orthogroups_2024-Update
LOC_Os07g42950 No alias 40S ribosomal protein S6, putative, expressed 0.06 Orthogroups_2024-Update
MA_10426804g0010 No alias (q9m3v8|rs6_aspof : 406.0) 40S ribosomal protein S6 -... 0.11 Orthogroups_2024-Update
MA_72828g0010 No alias (q9m3v8|rs6_aspof : 368.0) 40S ribosomal protein S6 -... 0.11 Orthogroups_2024-Update
Mp4g01750.1 No alias component RPS6 of SSU proteome 0.16 Orthogroups_2024-Update
PSME_00020471-RA No alias (q9m3v8|rs6_aspof : 393.0) 40S ribosomal protein S6 -... 0.06 Orthogroups_2024-Update
Potri.005G072700 No alias Ribosomal protein S6e 0.09 Orthogroups_2024-Update
Potri.005G162600 No alias Ribosomal protein S6e 0.05 Orthogroups_2024-Update
Potri.007G096300 No alias Ribosomal protein S6e 0.16 Orthogroups_2024-Update
Pp1s253_7V6 No alias 40S ribosomal protein S6 [Asparagus officinalis] 0.2 Orthogroups_2024-Update
Pp1s311_33V6 No alias 40S ribosomal protein S6 [Asparagus officinalis] 0.11 Orthogroups_2024-Update
Seita.2G394600.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Seita.3G362000.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Sobic.002G379500.3 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Sobic.008G098800.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.35 Orthogroups_2024-Update
Sopen08g002010 No alias Ribosomal protein S6e 0.35 Orthogroups_2024-Update
Sopen08g022890 No alias Ribosomal protein S6e 0.35 Orthogroups_2024-Update
Sopen12g032160 No alias Ribosomal protein S6e 0.26 Orthogroups_2024-Update
evm.model.contig_441.13 No alias (q9m3v8|rs6_aspof : 246.0) 40S ribosomal protein S6 -... 0.39 Orthogroups_2024-Update
evm.model.tig00000704.73 No alias (at5g10360 : 214.0) RPS6A and RPS6B are fully redundant... 0.19 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016289 CoA hydrolase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR001377 Ribosomal_S6e 1 128
No external refs found!