LOC_Os08g30680

Description : retrotransposon protein, putative, unclassified, expressed

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os08g30680
Cluster	HCCA clusters: cluster_0101

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os10g27260	No alias	transposon protein, putative, CACTA, En/Spm sub-class, expressed	0.03	Orthogroups_2024-Update
LOC_Os11g34050	No alias	retrotransposon, putative, centromere-specific, expressed	0.02	Orthogroups_2024-Update
Mp8g07960.1	No alias	no hits & (original description: none)	0.02	Orthogroups_2024-Update
Sopen00g005290	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen06g009810	No alias	Retroviral aspartyl protease	0.02	Orthogroups_2024-Update
Sopen08g006680	No alias	Integrase core domain	0.02	Orthogroups_2024-Update
evm.model.tig00000042.123	No alias	(original description: no original description)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004527	exonuclease activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	724	884
IPR001584	Integrase_cat-core	1236	1344
IPR005162	Retrotrans_gag_dom	213	305

External Links

No external refs found!