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  5. LOC_Os08g34230

LOC_Os08g34230


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g34230
Cluster HCCA clusters: cluster_0127

Target Alias Description ECC score Gene Family Method Actions
HORVU0Hr1G014810.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU0Hr1G015300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU0Hr1G030570.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU0Hr1G039350.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU1Hr1G011060.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G122960.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G002090.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G084730.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G038840.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g61190 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Mpzg00520.1 No alias Uncharacterized mitochondrial protein AtMg00860... 0.02 Orthogroups_2024-Update
Sopen01g027950 No alias Integrase core domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 183 276
No external refs found!