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LOC_Os08g39310


Description : SWIB/MDM2 domain containing protein, expressed


Gene families : OG_42_0001986 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001986_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g39310
Cluster HCCA clusters: cluster_0044

Target Alias Description ECC score Gene Family Method Actions
Brara.A01255.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E02291.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G035325 No alias SWIB complex BAF60b domain-containing protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G097590.7 No alias component *(SWIB) of SWI-B chromatin-remodeling complexes 0.02 Orthogroups_2024-Update
Potri.005G134500 No alias SWIB complex BAF60b domain-containing protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 221 291
IPR003121 SWIB_MDM2_domain 328 399
No external refs found!